Analyze Codon Usage Bias

A powerful bioinformatics pipeline to investigate the relationship between codon usage and protein secondary structures.

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Pipeline for Codon Usage Bias Study

Data Retrieval

Fetches CDS from NCBI and protein structures (PDB, FASTA) from RCSB.

Sequence Analysis

Translates DNA to protein sequences and identifies codons.

Structural Mapping

Correlates codons from the CDS to specific secondary structures.

Bias Calculation

Computes and visualizes codon frequencies and RSCU values.

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